Journal Articles - The laboratory of quantum photodynamics

O. Tau, A. Henley, A.N. Boichenko, N.N. Kleshchina, R. Riley, B. Wang, D. Winning, R. Lewin, I.P. Parkin, J.M. Ward, H.C. Hailes, A.V. Bochenkova, H.H. Fielding

Liquid-microjet photoelectron spectroscopy of the green fluorescent protein chromophore Nature Communications 2022, 13(1), 507

DOI: 10.1038/s41467-022-28155-5

Elisabeth Gruber, Adil M. Kabylda, Mogens Brøndsted Nielsen, Anne P. Rasmussen, Ricky Teiwes, Pavel A. Kusochek, Anastasia V. Bochenkova, Lars H. Andersen

Light driven ultrafast bioinspired molecular motors: Steering and accelerating photoisomerization dynamics of retinal J. Am. Chem. Soc. 2022, 144 (1), 69-73

DOI: 10.1021/jacs.1c10752

G.D. Sinenko, D.A. Farkhutdinova, I.N. Myasnyanko, N.S. Baleeva, M.S. Baranov, A.V. Bochenkova

Designing red-shifted molecular emitters based on the annulated locked GFP chromophore derivatives Int. J. Mol. Sci. 2021, 22(24), 13645

DOI: 10.3390/ijms222413645

Pavel A. Kusochek, Valentin V. Logvinov, Anastasia V. Bochenkova

Role of the Protein Environment in Photoisomerization of Type I and Type II Rhodopsins: a Theoretical Perspective Moscow University Chemistry Bulletin 2021, 76(6), 407–416

DOI: 10.3103/S0027131421060110

T.A. Odintsova, E.A. Serov, A.A. Balashov, M.A.Koshelev, A.O. Koroleva, A.A. Simonova, M.Yu. Tretyakov, N.N. Filippov, D.N. Chistikov, A.A. Finenko, S.E. Lokshtanov, S.V. Petrov, A.A. Vigasin

CO2–CO2 and CO2–Ar continua at millimeter wavelengths J. Quant. Spectr. Radiat. Trans. 2021, 258, 107400

DOI: 10.1016/j.jqsrt.2020.107400

Daniil N. Chistikov, Artem A. Finenko, Yulia N. Kalugina, Sergei E. Lokshtanov, Sergey V. Petrov, Andrey A. Vigasin

Simulation of collision-induced absorption spectra based on classical trajectories and ab initio potential and induced dipole surfaces. II. CO2–Ar rototranslational band including true dimer contribution J. Chem. Phys. 2021, 155, 064301

DOI: 10.1063/5.0060779

Pavel A. Kusochek, Andrei V Scherbinin, Anastasia V. Bochenkova

Insights into the Early-Time Excited-State Dynamics of Structurally Inhomogeneous Rhodopsin KR2 J. Phys. Chem. Lett. 2021, 12, 8664-8671

DOI: 10.1021/acs.jpclett.1c02312

Joanne L. Woodhouse, Alice Henley, Ross Lewin, John M. Ward, Helen C. Hailes, Anastasia V. Bochenkova, Helen H. Fielding

A photoelectron imaging study of the deprotonated GFP chromophore anion and RNA fluorescent tags Phys. Chem. Chem. Phys. 2021, 23, 19911-19922

DOI: 10.1039/D1CP01901E

Jeppe Langeland, Natascha W. Persen, Elisabeth Gruber, Hjalte V. Kiefer, Adil M. Kabylda, Anastasia V. Bochenkova, Lars H. Andersen

Controlling light‐induced proton transfer from the GFP chromophore ChemPhysChem 2021, 22, 833-841

DOI: 10.1002/cphc.202100068

Vladimir E. Bochenkov, Ekaterina M. Lobanova, Aleksander M. Shakhov, Artyom A. Astafiev, Alexey M. Bogdanov, Vadim A. Timoshenko, Anastasia V. Bochenkova

Plasmon-Enhanced Fluorescence of EGFP on Short-Range Ordered Ag Nanohole Arrays Nanomaterials 2020, 10, 2563

DOI: 10.3390/nano10122563

Dmitry A. Gorbachev, Elizaveta F. Petrusevich, Adil M. Kabylda, Eugene G. Maksimov, Konstantin A. Lukyanov, Alexey M. Bogdanov, Mikhail S. Baranov, Anastasia V. Bochenkova, and Alexander S. Mishin.

A General Mechanism of Green-to-Red Photoconversions of GFP Front. Mol. Biosci. 2020, 7, 176

DOI: 10.3389/fmolb.2020.00176

Cate S. Anstöter, Golda Mensa-Bonsu, Pamir Nag, Miloš Ranković, Ragesh Kumar T. P., Anton N. Boichenko, Anastasia V. Bochenkova, Juraj Fedor, and Jan R. R. Verlet

Mode-Specific Vibrational Autodetachment Following Excitation of Electronic Resonances by Electrons and Photons Phys. Rev. Lett. 2020, 124, 203401

DOI: 10.1103/PhysRevLett.124.203401

Seleznev Alexey O., Khrustov Vladimir F.

Spin-tensor multireference first-order polarization propagator approximation in comparison with several multireference methods on the example of low-lying electronic states of the CH+ ion Comp. Theor. Chem. 2020, 1175, 112733

DOI: 10.1016/j.comptc.2020.112733

Chang Xuanhao, Krasnoshchekov Sergey V., Pupyshev Vladimir I., Millionshchikov Dmitry V.

Normal ordering of the su(1, 1) ladder operators for the quasi-number states of the Morse oscillator Phys. Lett. A 2020, 384, 126493

DOI: 10.1016/j.physleta.2020.126493

Serov E.A., Balashov A.A., Tretyakov M.Yu, Odintsova T.A., Koshelev M.A., Chistikov D.N., Finenko A.A., Lokshtanov S.E., Petrov S.V., Vigasin A.A.

Continuum absorption of millimeter waves in nitrogen Journal of Quantitative Spectroscopy and Radiative Transfer 2020, 242, 106774

DOI: 10.1016/j.jqsrt.2019.106774

Tarakanova A.S., Buchachenko A.A., Bezrukov D.S.

Trapping sites of Li atom in the rare gascrystals Ar, Kr, and Xe: Analysis of stabilityand manifestation in the EPR spectra Low Temperature Physics 2020, 46, 165-172

DOI: 10.1063/10.0000535

Pazyuk E.A., Pupyshev V.I., Zaitsevskii A.V., Stolyarov A.V.

Spectroscopy of Diatomic Molecules in Non-Adiabatic Approximation Russ. J. Phys. Chem. A 2019, 93, 1865-1872

DOI: 10.1134/s0036024419100200

Montgomery H.E., Pupyshev V.I.

Dipole polarizability for confined two-electron atomic systems: simple approximations Phys. Scripta 2019 95, 015402

DOI: 10.1088/1402-4896/ab45a1

Pupyshev V.I., Montgomery H.E.

On the shell-confined atom problem Int. J. Quant. Chem. 2019, 119, e25887

DOI: 10.1002/qua.25887

Chistikov Daniil N., Finenko Artem A., Lokshtanov Sergei E., Petrov Sergey V., Vigasin Andrey A.

Comprehensive classical analysis of partition function and some observables for weakly interacting polyatomic dimers J. Che. Phys. 2019, 149, 194304

DOI: 10.1063/1.5054125

Chistikov Daniil N., Finenko Artem A., Lokshtanov Sergei E., Petrov Sergey V., Vigasin Andrey A.

Simulation of collision-induced absorption spectra based on classical trajectories and ab initio potential and induced dipole surfaces. I. Case study of N2–N2 rototranslational band J. Chem. Phys. 2019, 151, 194106

DOI: 10.1063/1.5125756

Ivanenkov Yan, Machulkin Alexey, Garanina Anastasia, Skvortsov Dmitry, Uspenskaya Anastasia, Deyneka Ekaterina, Alexander Trofimenko, Beloglazkina Elena, Zyk Nikolay, Bezrukov Dmitry, Majouga Alexander, etc

Synthesis and Biological Evaluation of Doxorubicin-containing Conjugate targeting PSMA Bioorganic and Medicinal Chemistry Letters 2019. 29, 1246-1255

DOI: 10.1016/j.bmcl.2019.01.040

Ivanenkov Yan A., Yamidanov Renat S., Osterman Ilya A., Sergiev Petr V., Ayginin Andrey A., Aladinskiy Vladimir A., Aladinskaya Anastasia V., Terentiev Victor A., Bezrukov Dmitry S., Puchinina Maria M., Dontsova Olga A., Lukianov Dmitrii A., etc

Substituted Furanocoumarins as Novel Class of Antibacterial Translation Inhibitors Combinatorial Chemistry and High Throughput Screening 2019, 22, 400-410

DOI: 10.2174/1386207322666190723110539

Ivanenkov YA, Yamidanov RS, Osterman IA, Bezrukov DS, Puchinina MM, Dontsova OA, etc

Large-scale high-throughput screening revealed 5′-(carbonylamino)-2,3′-bithiophene-4′-carboxylate as novel template for antibacterial agents Current Drug Discovery Technologies 2019

DOI: 10.2174/1570163816666190603095521

Veselov Mark S., Ivanenkov Yan A., Yamidanov Renat S., Bezrukov Dmitry S., Dontsova Olga A. etc

Identification of pyrrolo-pyridine derivatives as novel class of antibacterials Molecular Diversity 2019, 24, 233-239

DOI: 10.1007/s11030-019-09946-3

Ivanenkov Yan A., Zhavoronkov Alex, Yamidanov Renat S., Osterman Ilya A., Sergiev Petr V., Aladinskiy Vladimir A., Aladinskaya Anastasia V., Terentiev Victor A., Veselov Mark S., Ayginin Andrey A., Kartsev Victor G., Skvortsov Dmitry A., Chemeris Alexey V., Baimiev Alexey Kh, Sofronova Alina A., Malyshev Alexander S., Filkov Gleb I., Bezrukov Dmitry S., Zagribelnyy Bogdan A., Putin Evgeny O., Puchinina Maria M., Dontsova Olga A.

Identification of Novel Antibacterials Using Machine Learning Techniques Frontiers in pharmacology 2019, 10, e913

DOI: 10.3389/fphar.2019.00913

Pupyshev V.I., Montgomery Jr H.E.

Monotonicity in confined system problems J. Math. Chem. 2018, 56, 493-507

DOI: 10.1007/s10910-017-0797-x

Knudsen Jeppe L., Kluge Anika, Bochenkova Anastasia V., Kiefer Hjalte V., Andersen Lars H.

The UV-visible action-absorption spectrum of all-trans and 11-cis protonated Schiff base retinal in the gas phase Phys. Chem. Chem. Phys. 2018, 20, 7190-7194

DOI: 10.1039/C7CP07512J

Anstöter Cate S., Gartmann Thomas E., Stanley Laurence H., Bochenkova Anastasia V., Verlet Jan R.R.

Electronic structure of the para-dinitrobenzene radical anion: a combined 2D photoelectron imaging and computational study Phys. Chem. Chem. Phys. 2018, 20, 24019-24026

DOI: 10.1039/C8CP04877K

Pupyshev V.I., Montgomery Jr H.E.

One- and multiconfigurational study of excited states of He atom in a small impenetrable cavity Theor. Chem. Accounts 2017, 136, 138

DOI: 10.1007/s00214-017-2168-x

Bataev V.A., Pupyshev V.I., Godunov I.A.

Kinematic anharmonicity of internal rotation of molecules EPJ Web of Conferences 2017, 132, 03003

DOI: 10.1051/epjconf/201713203003

Montgomery Jr H.E., Pupyshev V.I.

Frequency-dependent polarizabilities and shielding factors for confined one-electron systems Phys. Scripta 2017, 92, 015401

DOI: 10.1088/1402-4896/92/1/015401

Petrov S.V., Lokshtanov S.E.

Trajectory analysis of the rotational dynamics of molecules J. Exp. Theor. Phys. 2015, 121, 186-193

DOI: 10.1134/S1063776115080208

Petrov S.V.

Classical dynamics of the relativistic oscillator Eur. J. Phys. 2016, 37, 065605

DOI: 10.1088/0143-0807/37/6/065605

Tao L.G., Kleshchina N.N., Lambo R., Buchachenko A.A., Zhou X.G., Bezrukov D.S., Hu S.M.

Heat- and light-induced transformations of Yb trapping sites in an Ar matrix J. Chem. Phys. 2016, 143, 174306

DOI: 10.1063/1.4934999

Ivanenkov Yan A., Veselov Mark S., Rezekin Igor G., Skvortsov Dmitriy A., Sandulenko Yuri B., Polyakova Marina V., Bezrukov Dmitry S., Vasilevsky Sergey V., Kukushkin Maxim E., Moiseeva Anna A., Finko Alexander V., Koteliansky Victor E., Klyachko Natalia L., Filatova Lubov A., Beloglazkina Elena K., Zyk Nikolay V., Majouga Alexander G.

Synthesis, isomerization and biological activity of novel 2-selenohydantoin derivatives Bioorganic and Medicinal Chemistry 2016, 24, 802-811

DOI: 10.1016/j.bmc.2015.12.050

Ostrom J., Bezrukov D.S., Nyman G., Gustafsson M.

Reaction rate constant for radiative association of CF J. Chem. Phys. 2016, 144, 044302

DOI: 10.1063/1.4940216

Kleshchina Nadezhda N., Korchagina Kseniia A., Bezrukov Dmitry S., Buchachenko Alexei A.

Modeling of Manganese Atom and Dimer Isolated in Solid Rare Gases: Structure, Stability, and Effect on Spin Coupling J. Phys. Chem. A 2017, 121, 2429-2441

DOI: 10.1021/acs.jpca.6b12444

Kiefer Hjalte V., Lattouf Elie, Persen Natascha W., Bochenkova Anastasia V., Andersen Lars H.

How far can a single hydrogen bond tune the spectral properties of the GFP chromophore? Phys. Chem. Chem. Phys. 2015,17, 20056-20060

DOI: 10.1039/C5CP02764K

Journal Articles - The laboratory of quantum photodynamics

Latest Events

Our paper “Wavelength dependent mechanism of phenolate photooxidation in aqueous solution” is published in Chemical Science!

Our paper on protein mobility measurements using green-to-red EGFP photoconversion is published in J Phys Chem B

Our paper on multiphoton ionization of the GFP chromophore in solution is published in Nature Communications!