Publication list - The laboratory of quantum photodynamics

70 entries « 1 of 2 »

2022

70.

Bochenkova A V, Andersen L H

Action-Absorption Spectroscopy at the Band Origin of the Deprotonated Green Fluorescent Protein Chromophore In Vacuo Journal Article

In: J Phys Chem Lett, vol. 13, no. 29, pp. 6683–6685, 2022, ISSN: 1948-7185.

Abstract | Links | BibTeX

69.

Bochenkov V E, Sopova N S, Shakhov A M, Astafiev A A, Bochenkova A V

Protein Mobility Measurements through Oxidative Green-to-Red Photoconversion of EGFP Journal Article

In: The Journal of Physical Chemistry B, vol. 126, iss. 23, pp. 4184–4188, 2022.

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68.

Rasmussen A P, Teiwes R, Farkhutdinova D A, Bochenkova A V, Andersen L H

On the temperature of large biomolecules in ion-storage rings Journal Article

In: The European Physical Journal D, vol. 76, no. 5, pp. 76, 2022.

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67.

Gruber E, Kabylda A M, Nielsen M B, Rasmussen A P, Teiwes R, Kusochek P A, Bochenkova A V, Andersen L H

Light Driven Ultrafast Bioinspired Molecular Motors: Steering and Accelerating Photoisomerization Dynamics of Retinal Journal Article

In: Journal of the American Chemical Society, vol. 144, no. 1, pp. 69–73, 2022.

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66.

Tau O, Henley A, Boichenko A N, Kleshchina N N, Riley R, Wang B, Winning D, Lewin R, Parkin I P, Ward J M, Hailes H C, Bochenkova A V, Fielding H H

Liquid-microjet photoelectron spectroscopy of the green fluorescent protein chromophore Journal Article

In: Nature communications, vol. 13, no. 1, pp. 507, 2022, ISSN: 2041-1723.

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65.

Finenko A A, Bézard B, Gordon I E, Chistikov D N, Lokshtanov S E, Petrov S V, Vigasin A A

Trajectory-based Simulation of Far-infrared Collision-induced Absorption Profiles of CH4–N2 for Modeling Titan’s Atmosphere Journal Article

In: The Astrophysical Journal Supplement Series, vol. 258, no. 2, pp. 33, 2022.

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64.

Sokolov A I, Sycheva M A, Farkhutdinova D A, Myasnyanko I N, Mikhaylov A A, Baleeva N S, Bochenkova A V, Baranov M S

Fluorescent 2-Hydroxy-3-(pyridin-2-yl)-4H-quinolizin-4-ones through Dimerization of Pyridineacetic Acids Journal Article

In: European Journal of Organic Chemistry, vol. 2022, no. 30, pp. e202200680, 2022.

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2021

63.

Lambo R, Xu C -Y, Pratt S T, Xu H, Zappala J C, Bailey K G, Lu Z -T, Mueller P, O’Connor T P, Kamorzin B B, Bezrukov D S, Xie Y -Q, Buchachenko A A, Singh J T

High-resolution spectroscopy of neutral Yb atoms in a solid Ne matrix Journal Article

In: Phys. Rev. A, vol. 104, iss. 6, pp. 062809, 2021.

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62.

Leibin I V, Bezrukov D S, Buchachenko A A

Trapping and migration of P-state atoms in rare gas solids: effect of angular momentum anisotropy for model O(3P) and C(3P) atoms Journal Article

In: Molecular Physics, pp. e1995633, 2021, ISSN: 1362-3028; 0026-8976.

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61.

Pokhilko P, Bezrukov D S, Krylov A I

Is Solid Copper Oxalate a Spin Chain or a Mixture of Entangled Spin Pairs? Journal Article

In: Journal of Physical Chemistry C, vol. 125, pp. 7502, 2021, ISSN: 1932-7455; 1932-7447.

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60.

Sinenko G D, Farkhutdinova D A, Myasnyanko I N, Baleeva N S, Baranov M S, Bochenkova A V

Designing red-shifted molecular emitters based on the annulated locked GFPchromophore derivatives Journal Article

In: International Journal of Molecular Sciences, vol. 22, no. 24, pp. 13645, 2021.

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59.

Kusochek P A, Logvinov V V, Bochenkova A V

Role of the Protein Environment in Photoisomerization of Type I and Type II Rhodopsins: a Theoretical Perspective Journal Article

In: Moscow University Chemistry Bulletin, vol. 76, no. 6, pp. 407-416, 2021.

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58.

Woodhouse J L, Henley A, Lewin R, Ward J M, Hailes H C, Bochenkova A V, Fielding H H

A photoelectron imaging study of the deprotonated GFP chromophore anion and RNA fluorescent tags Journal Article

In: Physical Chemistry Chemical Physics, vol. 23, no. 35, pp. 19911-19922, 2021.

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57.

Langeland J, Persen N W, Gruber E, Kiefer H V, Kabylda A M, Bochenkova A V, Andersen L H

Controlling Light-Induced Proton Transfer from the GFP Chromophore Journal Article

In: ChemPhysChem, vol. 22, no. 9, pp. 833-841, 2021.

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56.

Kusochek P A, Scherbinin A V, Bochenkova A V

Insights into the Early-Time Excited-State Dynamics of Structurally Inhomogeneous Rhodopsin KR2 Journal Article

In: Journal of Physical Chemistry Letters, pp. 8664-8671, 2021.

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55.

Ivanenkov Y A, Filyaeva K Y, Matniyazov R T, Baymiev A K, Vladimirova A A, Yamidanov R S, Mavzyutov A R, Zileeva Z R, Zainullina L F, Vakhitova J V, Marina V I, Terentiev V A, Osterman I A, Kartsev V G, Bezrukov D S, Dontsova O A

Antibacterial activity of noscapine analogs Journal Article

In: Bioorganic and Medicinal Chemistry Letters, vol. 43, no. 4, pp. 128055, 2021, ISSN: 1464-3405; 0960-894X.

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54.

Ozerov G K, Bezrukov D S, Buchachenko A A

Generic accommodations of an atom in the Lennard-Jones fcc and hcp rare-gas solids: A computational study Journal Article

In: Physical Review B, vol. 103, pp. 184110, 2021, ISSN: 0163-1829; 2469-9950; 2469-9969; 1098-0121.

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53.

Leibin I V, Kalinina I S, Bezrukov D S, Buchachenko A A

Modeling of the thermal migration mechanisms of atomic oxygen in Ar, Kr, and Xe crystals Journal Article

In: Journal of Chemical Physics, vol. 154, pp. 044305, 2021, ISSN: 1089-7690; 0021-9606.

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52.

Ozerov G K, Bezrukov D S, Buchachenko A A

Molecular dynamics simulations of the Ba+ ion mobility in liquid xenon Journal Article

In: Journal of Physics: Conference Series, vol. 1740, 2021, ISSN: 1742-6596; 1742-6588.

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51.

Odintsova T A, Serov E A, Balashov A A, Koshelev M A, Koroleva A O, Simonova A A, Tretyakov M Y, Filippov N N, Chistikov D N, Finenko A A, Lokshtanov S E, Petrov S V, Vigasin A A

CO2–CO2 and CO2–Ar continua at millimeter wavelengths Journal Article

In: Journal of Quantitative Spectroscopy and Radiative Transfer, vol. 258, pp. 107400–107400-10, 2021, ISSN: 0022-4073.

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50.

Chistikov D N, Finenko A A, Kalugina Y N, Lokshtanov S E, Petrov S V, Vigasin A A

Simulation of collision-induced absorption spectra based on classical trajectories and ab initio potential and induced dipole surfaces. II. CO2–Ar rototranslational band including true dimer contribution Journal Article

In: Journal of Chemical Physics, vol. 155, no. 6, pp. 064301-1–064301-17, 2021, ISSN: 1089-7690; 0021-9606.

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49.

Finenko A A, Chistikov D N, Kalugina Y N, Conway E K, Gordon I E

Fitting potential energy and induced dipole surfaces of the van der Waals complex CH4-N2 using non-product quadrature grids Journal Article

In: Physical Chemistry Chemical Physics, vol. 23, pp. 18475–18494, 2021, ISSN: 1463-9084; 1463-9076.

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2020

48.

Bochenkov V E, Lobanova E M, Shakhov A M, Astafiev A A, Bogdanov A M, Timoshenko V A, Bochenkova A V

Plasmon-enhanced fluorescence of EGFP on short-range ordered ag nanohole arrays Journal Article

In: Nanomaterials, vol. 10, no. 12, pp. 1-11, 2020.

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47.

Gorbachev D A, Petrusevich E F, Kabylda A M, Maksimov E G, Lukyanov K A, Bogdanov A M, Baranov M S, Bochenkova A V, Mishin A S

A General Mechanism of Green-to-Red Photoconversions of GFP Journal Article

In: Frontiers in Molecular Biosciences, vol. 7, 2020.

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46.

Anstöter C S, Mensa-Bonsu G, Nag P, Ranković M, P. R K T, Boichenko A N, Bochenkova A V, Fedor J, Verlet J R R

Mode-Specific Vibrational Autodetachment following Excitation of Electronic Resonances by Electrons and Photons Journal Article

In: Physical Review Letters, vol. 124, no. 20, 2020.

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45.

Veselov M S, Ivanenkov Y A, Yamidanov R S, Osterman I A, Sergiev P V, Aladinskiy V A, Aladinskaya A V, Terentiev V A, Ayginin A A, Skvortsov D A, Komarova K S, Chemeris A V, Baimiev A K, Sofronova A A, Machulkin A E, Petrov R A, Maklakova S Y, Bezrukov D S, Filkov G I, Zainullina L F, Maximova M A, Zileeva Z R, Kartsev V G, Vakhitova Y V, Dontsova O A

Identification of pyrrolo-pyridine derivatives as novel class of antibacterials Journal Article

In: Molecular Diversity, vol. 24, no. 1, pp. 233–239, 2020, ISSN: 1573-501X; 1381-1991.

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44.

Ivanenkov Y A, Osterman I A, Komarova E S, Bogdanov A A, Sergiev P V, Dontsova O A, Sofronova A A, Terentiev V A, Filkov G I, Yamidanov R S, Majouga A G, Bezrukov D S, Deyneka E V, Skvortsov D A

Tetrahydrocarbazoles as Novel Class of DNA Biosynthesis Inhibitors in Bacteria Journal Article

In: Anti-Infective Agents in Medicinal Chemistry, vol. 18, no. 2, pp. 121–127, 2020, ISSN: 1871-5214.

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43.

Tarakanova A S, Buchachenko A A, Bezrukov D S

Trapping sites of Li atom in the rare gascrystals Ar, Kr, and Xe: Analysis of stabilityand manifestation in the EPR spectra Journal Article

In: Low Temperature Physics, vol. 46, pp. 165–172, 2020, ISSN: 1090-6517; 1063-777X.

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42.

Serov E A, Balashov A A, Tretyakov M Y, Odintsova T A, Koshelev M A, Chistikov D N, Finenko A A, Lokshtanov S E, Petrov S V, Vigasin A A

Continuum absorption of millimeter waves in nitrogen Journal Article

In: Journal of Quantitative Spectroscopy and Radiative Transfer, vol. 242, pp. 106774–106774-9, 2020, ISSN: 0022-4073.

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41.

Petrov S V

Was Sommerfeld wrong? (To the history of the appearance of spin in relativistic wave equations) Journal Article

In: Physics Uspekhi, vol. 63, no. 7, 2020, ISSN: 1468-4780; 1063-7869.

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40.

Chistikov D N, Finenko A A, Kazakov K V

Coriolis effects in the rovibrational structure of an atom-diatom dimer Journal Article

In: Journal of Quantitative Spectroscopy and Radiative Transfer, vol. 245, pp. 106874, 2020, ISSN: 0022-4073.

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39.

Seleznev A O, Khrustov V F

Spin-tensor multireference first-order polarization propagator approximation in comparison with several multireference methods on the example of low-lying electronic states of the CH+ ion Journal Article

In: Computational and theoretical chemistry, vol. 1175, pp. 112733, 2020, ISSN: 2210-271X.

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38.

Xuanhao C, Krasnoshchekov S V, Pupyshev V I, Millionshchikov D V

Normal ordering of the su(1, 1) ladder operators for the quasi-number states of the Morse oscillator Journal Article

In: Physics Letters, Section A: General, Atomic and Solid State Physics, vol. 384, no. 19, pp. 126493, 2020, ISSN: 0375-9601.

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37.

Montgomery H E, Pupyshev V I

Dipole polarizability for confined two-electron atomic systems: simple approximations Journal Article

In: Physica Scripta, vol. 95, no. 1, pp. 015402, 2020, ISSN: 0281-1847; 1402-4896; 0031-8949.

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2019

36.

Zaitseva S O, Farkhutdinova D A, Baleeva N S, Smirnov A Y, Zagudaylova M B, Shakhov A M, Astafiev A A, Baranov M S, Bochenkova A V

Excited-state locked amino analogues of the green fluorescent protein chromophore with a giant Stokes shift Journal Article

In: RSC advances, vol. 9, no. 66, pp. 38730–38734, 2019, ISSN: 2046-2069.

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35.

Kiefer H V, Elisabeth G, Jeppe L, Kusochek P A, Bochenkova A V, Andersen L H

Intrinsic photoisomerization dynamics of protonated Schiff-base retinal Journal Article

In: Nature communications, vol. 10, pp. 1210-1–1210-9, 2019, ISSN: 2041-1723.

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34.

Koroleva L A, Abramenkov A V, Krasnoshchekov S V, Korolyova A V, Bochenkova A V

Potential functions of internal rotation of the methacryloyl fluoride molecule in the ground (S0) and excited (S1) electronic states Journal Article

In: Journal of Molecular Structure, vol. 1181, pp. 228–234, 2019, ISSN: 0022-2860.

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33.

Ivanenkov Y A, Yamidanov R S, Osterman I A, Sergiev P V, Aladinskiy V A, Aladinskaya A V, Terentiev V A, Veselov M S, Ayginin A A, Skvortsov D A, Komarova K S, Sadovnikov S V, Rustam M, Sofronova A A, Malyshev A S, Machulkin A E, Petrov R A, Dmitrii L, Svetlana I, Bezrukov D S, Baymiev A K, Dontsova O A

2-Pyrazol-1-yl-thiazole derivatives as novel highly potent antibacterials Journal Article

In: Journal of Antibiotics, vol. 72, pp. 827–833, 2019, ISSN: 1881-1469; 0021-8820.

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32.

Rutskoy B V, Bezrukov D S

Ab Initio Description of the Structure and Interaction Energy of Perhalomethane Dimers Journal Article

In: Russian Journal of Physical Chemistry A, vol. 93, no. 8, pp. 1519–1524, 2019, ISSN: 1531-863X; 0036-0244.

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31.

Bezrukov D S, Kleshchina N N, Kalinina I S, Buchachenko A A

Ab initio interaction potentials of the Ba, Ba+ complexes with Ar, Kr, and Xe in the lowest excited states Journal Article

In: Journal of Chemical Physics, vol. 150, no. 6, pp. 064314, 2019, ISSN: 1089-7690; 0021-9606.

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30.

Ozerov G K, Bezrukov D S, Buchachenko A A

Accommodation of a dimer in an Ar-like lattice: exploring the generic structural motifs Journal Article

In: Physical Chemistry Chemical Physics, vol. 21, pp. 16549–16563, 2019, ISSN: 1463-9084; 1463-9076.

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29.

Ozerov G K, Bezrukov D S, Buchachenko A A

Computational study of the stable atomic trapping sites in Ar lattice Journal Article

In: Low Temperature Physics, vol. 45, no. 3, pp. 301–309, 2019, ISSN: 1090-6517; 1063-777X.

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28.

Bezrukov D S, Kleshchina N N, Kalinina I S, Buchachenko A A

Empirically Modified Potentials of Interaction between Rare Gases for Matrix Isolation Problems Journal Article

In: Russian Journal of Physical Chemistry A, vol. 93, no. 8, pp. 1505–1512, 2019, ISSN: 1531-863X; 0036-0244.

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27.

Ivanenkov Y A, Yamidanov R S, Osterman I A, Sergiev P V, Aladinskiy V A, Aladinskaya A V, Terentiev V A, Veselov M S, Ayginin A A, Skvortsov D A, Komarova K S, Chemeris A V, Baimiev A K, Sofronova A A, Malyshev A S, Machulkin A E, Petrov R A, Bezrukov D S, Filkov G I, Puchinina M M, Zainullina L F, Maximova M A, Zileeva Z R, Vakhitova Y V, Dontsova O A

Identification of N-Substituted Triazolo-azetidines as Novel Antibacterials using pDualrep2 HTS Platform Journal Article

In: Combinatorial Chemistry and High Throughput Screening, vol. 22, no. 5, pp. 346–354, 2019, ISSN: 1875-5402; 1386-2073.

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26.

Ivanenkov Y A, Zhavoronkov A, Yamidanov R S, Osterman I A, Sergiev P V, Aladinskiy V A, Aladinskaya A V, Terentiev V A, Veselov M S, Ayginin A A, Kartsev V G, Skvortsov D A, Chemeris A V, Baimiev A K, Sofronova A A, Malyshev A S, Filkov G I, Bezrukov D S, Zagribelnyy B A, Putin E O, Puchinina M M, Dontsova O A

Identification of Novel Antibacterials Using Machine Learning Techniques Journal Article

In: Frontiers in pharmacology, vol. 10, pp. e913, 2019, ISSN: 1663-9812.

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25.

Ivanenkov Y, Yamidanov R, Osterman I, Sergiev P, Aladinskiy V, Aladinskaya A, Terentiev V, Veselov M, Ayginin A, Skvortsov D, Komarova E, Zagribelnyy B, Baimiev A, Shvetc K, Sofronova A, Machulkin A, Petrov R, Zainullina L, Maximova M, Zileeva Z, Vakhitova Y, Bezrukov D, Puchinina M, Dontsova O

Large-scale high-throughput screening revealed 5′-(carbonylamino)-2,3′-bithiophene-4′-carboxylate as novel template for antibacterial agents Journal Article

In: Current Drug Discovery Technologies, 2019, ISSN: 1570-1638.

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24.

Kleshchina N N, Kalinina I S, Leibin I V, Bezrukov D S, Buchachenko A A

Stable axially symmetric atomic impurity in an fcc solid-Ba in rare gases Journal Article

In: Journal of Chemical Physics, vol. 151, pp. 121104-1–121104-6, 2019, ISSN: 1089-7690; 0021-9606.

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23.

Ivanenkov Y A, Yamidanov R S, Osterman I A, Sergiev P V, Ayginin A A, Aladinskiy V A, Aladinskaya A V, Terentiev V A, Veselov M S, Skvortsov D A, Komarova K S, Chemeris A V, Zainullina L F, Maximova M A, Zileeva Z R, Vakhitova Y V, Baimiev A K, Sofronova A A, Machulkin A E, Petrov R A, Bezrukov D S, Puchinina M M, Dontsova O A, Lukianov D A

Substituted Furanocoumarins as Novel Class of Antibacterial Translation Inhibitors Journal Article

In: Combinatorial Chemistry and High Throughput Screening, vol. 22, no. 6, pp. 400–410, 2019, ISSN: 1875-5402; 1386-2073.

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22.

Ivanenkov Y, Machulkin A, Garanina A, Skvortsov D, Uspenskaya A, Deyneka E, Alexander T, Beloglazkina E, Zyk N, Koteliansky V, Bezrukov D, Aladinskaya A, Vorobyeva N, Puchinina M, Riabykh G, Sofronova A, Malyshev A, Majouga A

Synthesis and Biological Evaluation of Doxorubicin-containing Conjugate targeting PSMA Journal Article

In: Bioorganic and Medicinal Chemistry Letters, vol. 29, no. 10, pp. 1246–1255, 2019, ISSN: 1464-3405; 0960-894X.

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21.

Kleshchina N N, Kalinina I S, Lambo R, Buchachenko A A, Bezrukov D S, S-M H

Triplet emission of atomic ytterbium isolated in a xenon matrix Journal Article

In: Low Temperature Physics, vol. 45, pp. 707–714, 2019, ISSN: 1090-6517; 1063-777X.

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